Photoinduced in situ generation of DNA-targeting ligands: DNA-binding and DNA-photodamaging properties of benzo[c]quinolizinium ions

• Julika Schlosser,
• Olga Fedorova,
• Yuri Fedorov and
• Heiko Ihmels

Beilstein J. Org. Chem. 2024, 20, 101–117, doi:10.3762/bjoc.20.11

• species (ROS), such peroxyl, alkoxy and hydroxyl radicals, or carbon-centered radicals, which subsequently induce DNA strand cleavage. In the type-II mechanism, a triplet-excited photosensitizer reacts with molecular oxygen to give highly reactive singlet oxygen, 1O2, as reactive intermediate, which in

• reactive intermediate 1O2 is known to induce DNA damage [78][88]. Nevertheless, these lesions, namely DNA base oxidations, often require alkaline treatment to lead to a strand cleavage, so that the DNA damage remained mainly unnoticed in the employed assay. At the same time, it has been reported that 1O2

Photoredox catalysis harvesting multiple photon or electrochemical energies

• Mattia Lepori,
• Simon Schmid and
• Joshua P. Barham

Beilstein J. Org. Chem. 2023, 19, 1055–1145, doi:10.3762/bjoc.19.81

• neutral PDI and forms the aryl halide’s radical anion, which then undergoes C(sp2)–X bond fission to afford the aryl radical as a reactive intermediate. The aryl radical then either reacts via hydrogen atom transfer (HAT) with solvent molecules or Et3N•+ in an overall dehalogenation to furnish product 2

Copper-catalyzed N-arylation of amines with aryliodonium ylides in water

• Kasturi U. Nabar,
• Bhalchandra M. Bhanage and
• Sudam G. Dawande

Beilstein J. Org. Chem. 2023, 19, 1008–1014, doi:10.3762/bjoc.19.76

• generation of carbene as a reactive intermediate [36][37]. Also, spirocyclic iodonium ylides have been used for radiolabeling techniques [38]. In 2013, Shibata’s research group reported a novel trifluoromethanesulfonyl iodonium ylide for trifluoromethylthiolation of enamines, indoles, and ketoesters

Iron-catalyzed domino coupling reactions of π-systems

• Austin Pounder and
• William Tam

Beilstein J. Org. Chem. 2021, 17, 2848–2893, doi:10.3762/bjoc.17.196

• is the termination of the reaction through the trapping of the reactive intermediate. Organoiron complexes have been shown to undergo electrophilic trapping with external species or proceed through cross-coupling eventually undergoing reductive elimination. Radical addition will typically conclude

Visible-light-mediated copper photocatalysis for organic syntheses

• Yajing Zhang,
• Qian Wang,
• Zongsheng Yan,
• Donglai Ma and
• Yuguang Zheng

Beilstein J. Org. Chem. 2021, 17, 2520–2542, doi:10.3762/bjoc.17.169

• – is stabilized by the copper complex. The alkyl radical reacts with LnCuII-SO2Cl to deliver the target product 5. A mechanistic study demonstrated that [Cu(dap)2]Cl can coordinate with the reactive intermediate SO2Cl and suppresses the extrusion of SO2. Thus, [Cu(dap)2]Cl achieves a unique

Photoredox catalysis in nickel-catalyzed C–H functionalization

• Lusina Mantry,
• Rajaram Maayuri,
• Vikash Kumar and
• Parthasarathy Gandeepan

Beilstein J. Org. Chem. 2021, 17, 2209–2259, doi:10.3762/bjoc.17.143

• involves an energy-transfer pathway generating an electronically excited nickel complex as a key reactive intermediate (Figure 11). Photochemical nickel catalysis was used to synthesize 1,1-diarylalkanes 39 from unactivated alkyl bromides 38 and aryl bromides 3 through a reductive migratory cross-coupling

Icilio Guareschi and his amazing “1897 reaction”

• Gian Cesare Tron,
• Alberto Minassi,
• Giovanni Sorba,
• Mara Fausone and
• Giovanni Appendino

Beilstein J. Org. Chem. 2021, 17, 1335–1351, doi:10.3762/bjoc.17.93

• reactive intermediate capable of transferring a phosphate group to ATP. The Guareschi “1897 reaction” shows a basically different strategy to generate reductive power, associated to aromatization of a prearomatic substrate. The chemiosmotic generation of energy is as universal as the genetic code, and the

CF₃-substituted carbocations: underexploited intermediates with great potential in modern synthetic chemistry

• Anthony J. Fernandes,
• Armen Panossian,
• Bastien Michelet,
• Agnès Martin-Mingot,
• Frédéric R. Leroux and
• Sébastien Thibaudeau

Beilstein J. Org. Chem. 2021, 17, 343–378, doi:10.3762/bjoc.17.32

The preparation and properties of 1,1-difluorocyclopropane derivatives

• Kymbat S. Adekenova,
• Peter B. Wyatt and
• Sergazy M. Adekenov

Beilstein J. Org. Chem. 2021, 17, 245–272, doi:10.3762/bjoc.17.25

Azo-dimethylaminopyridine-functionalized Ni(II)-porphyrin as a photoswitchable nucleophilic catalyst

• Jannis Ludwig,
• Julian Helberg,
• Hendrik Zipse and
• Rainer Herges

Beilstein J. Org. Chem. 2020, 16, 2119–2126, doi:10.3762/bjoc.16.179

• -porphyrin. The DMAP-catalyzed acetylation of alcohols should not suffer from this drawback because the reactive intermediate (acylpyridinium cation) is positively charged and does not coordinate to the Ni2+ ion [33]. Another promising approach towards coordination-based, photoswitchable catalysts are

[3 + 2] Cycloaddition with photogenerated azomethine ylides in β-cyclodextrin

• Margareta Sohora,
• Leo Mandić and
• Nikola Basarić

Beilstein J. Org. Chem. 2020, 16, 1296–1304, doi:10.3762/bjoc.16.110

• . Irradiation of such a complex leads to decarboxylation and formation of the reactive intermediate, azomethine ylide, within the supramolecular host. The subsequent [3 + 2] cycloaddition within the inclusion complex gives heterocyclic cycloadducts, even though it is conducted in aqueous solvent in which ylides

Photocatalysis with organic dyes: facile access to reactive intermediates for synthesis

• Stephanie G. E. Amos,
• Marion Garreau,
• Luca Buzzetti and
• Jerome Waser

Beilstein J. Org. Chem. 2020, 16, 1163–1187, doi:10.3762/bjoc.16.103

• each of these steps, the role of A or D is assumed by a redox-active agent, either the substrate, a sacrificial electron donor/acceptor, or a reactive intermediate. This approach, usually named photoredox catalysis, has known a remarkable growth in the last decade and has given access to both neutral

• -systems: heteroarenes and electron-poor alkenes in particular. Using the tools of organophotocatalysis, this reactive intermediate can be directly obtained from carbonyl derivatives, such as aldehydes, α-keto acids, oxalates, or carbamates through oxidative or reductive decarboxylations, oxidative

Cation-induced ring-opening and oxidation reaction of photoreluctant spirooxazine–quinolizinium conjugates

• Phil M. Pithan,
• Sören Steup and
• Heiko Ihmels

Beilstein J. Org. Chem. 2020, 16, 904–916, doi:10.3762/bjoc.16.82

• initial development of a broad absorption band between 500 nm and 650 nm was also observed, which again gradually disappeared during the course of the reaction. These observations pointed towards the formation of the red-colored, open merocyanine form as a very reactive intermediate during the reaction

The use of isoxazoline and isoxazole scaffolding in the design of novel thiourea and amide liquid-crystalline compounds

• Itamar L. Gonçalves,
• Rafaela R. da Rosa,
• Vera L. Eifler-Lima and
• Aloir A. Merlo

Beilstein J. Org. Chem. 2020, 16, 175–184, doi:10.3762/bjoc.16.20

• ]+ during the condensation reaction of thiocyanate salt, a reaction test was performed to confirm the reactivity between the amines and acyl chloride. This involved the formation and isolation of amide 24, as a result of the reaction between the reactive intermediate nonyloxybenzoyl chloride from acid 23

Selectivity in multiple multicomponent reactions: types and synthetic applications

• Ouldouz Ghashghaei,
• Francesca Seghetti and
• Rodolfo Lavilla

Beilstein J. Org. Chem. 2019, 15, 521–534, doi:10.3762/bjoc.15.46

• step in the process leads to a less reactive intermediate, the system may stop temporarily at this level, and once completed, a second MCR with a distinct set of reagents may take place under more vigorous activation. This allows for selective sequential MMCRs, although there is a clear dependency on

Study on the regioselectivity of the N-ethylation reaction of N-benzyl-4-oxo-1,4-dihydroquinoline-3-carboxamide

• Pedro N. Batalha,
• Luana da S. M. Forezi,
• Maria Clara R. Freitas,
• Nathalia M. de C. Tolentino,
• Ednilsom Orestes,
• José Walkimar de M. Carneiro,
• Fernanda da C. S. Boechat and
• Maria Cecília B. V. de Souza

Beilstein J. Org. Chem. 2019, 15, 388–400, doi:10.3762/bjoc.15.35

• the oxoquinoline, when compared to that of the carboxamide group. Because of this, the treatment with the base produces the reactive intermediate, the conjugate base resulting from the deprotonation of the oxoquinoline core, probably exclusively, which acts as the nucleophile in the SN2 reaction with

Annulation of 1H-pyrrole-2,3-diones by thioacetamide: an approach to 5-azaisatins

• Aleksandr I. Kobelev,
• Ekaterina E. Stepanova,
• Maksim V. Dmitriev and
• Andrey N. Maslivets

Beilstein J. Org. Chem. 2019, 15, 364–370, doi:10.3762/bjoc.15.32

• chromatography. Moreover, the resulting compounds may be of pharmaceutical interest and can be starting materials for the synthesis of various aza analogs of isatin-based heterocycles. It also should be mentioned that we have observed an interesting thioacetamide-based reactive intermediate that can possibly

Sigmatropic rearrangements of cyclopropenylcarbinol derivatives. Access to diversely substituted alkylidenecyclopropanes

• Guillaume Ernouf,
• Jean-Louis Brayer,
• Christophe Meyer and
• Janine Cossy

Beilstein J. Org. Chem. 2019, 15, 333–350, doi:10.3762/bjoc.15.29

• rearrangement of cyanate 27 into isocyanate 28 (Scheme 15) [53]. All attempts to isolate isocyanate 28 were unsuccessful but derivatization of this latter reactive intermediate could be achieved in situ by addition of a broad range of nucleophiles, which were either used as co-solvents or added in excess. Thus

Cobalt- and rhodium-catalyzed carboxylation using carbon dioxide as the C1 source

• Tetsuaki Fujihara and
• Yasushi Tsuji

Beilstein J. Org. Chem. 2018, 14, 2435–2460, doi:10.3762/bjoc.14.221

• importance, since the highly reactive intermediate can be generated by photochemical reaction such as electron transfer and energy transfer [43][44][45]. Among them, light-energy-driven CO2 fixation reactions via C–C bond formation are promising in terms of mimicking photosynthesis. In 2015, Murakami et al

Diazirine-functionalized mannosides for photoaffinity labeling: trouble with FimH

• Femke Beiroth,
• Tomas Koudelka,
• Thorsten Overath,
• Stefan D. Knight,
• Andreas Tholey and
• Thisbe K. Lindhorst

Beilstein J. Org. Chem. 2018, 14, 1890–1900, doi:10.3762/bjoc.14.163

• ][2][3][4]. Photoaffinity labeling requires a ligand equipped with a photolabile group, which can be converted into a highly reactive intermediate upon irradiation with light of an appropriate wavelength. This technique involves incubation of the photolabile ligand with the target protein (receptor

Synthesis of new tricyclic 5,6-dihydro-4H-benzo[b][1,2,4]triazolo[1,5-d][1,4]diazepine derivatives by [3⁺ + 2]-cycloaddition/rearrangement reactions

• Lin-bo Luan,
• Zi-jie Song,
• Zhi-ming Li and
• Quan-rui Wang

Beilstein J. Org. Chem. 2018, 14, 1826–1833, doi:10.3762/bjoc.14.155

• the synthesis with a proposed mechanism as outlined in Scheme 5 with the α-acetoxyphenylazo compound 8a serving as a model substrate. In this pathway, the reaction is initiated by AlCl3 coordination with the acetate moiety of 8a to generate the azocarbenium ion 14 as a reactive intermediate, which

Mannich base-connected syntheses mediated by ortho-quinone methides

• Petra Barta,
• Ferenc Fülöp and
• István Szatmári

Beilstein J. Org. Chem. 2018, 14, 560–575, doi:10.3762/bjoc.14.43

• indication that the application of this highly-reactive intermediate has made the modified Mannich reaction to be a hot topic again in organic chemistry. This review presents a wide range of applications including cycloadditions and the synthesis of bifunctional amino- or amidonaphthols that can later be

• be explained by the generation of an o-QM intermediate followed by the nucleophilic addition of the amine component, the reverse reaction with the corresponding nucleophile is also feasible. Mechanistically, the Mannich adduct generates an o-QM via the loss of an amine, then this reactive

• intermediate reacts with the nucleophile (dienophile) species in different reactions to form a wide range of heterocyclic compounds. Reactions with C=C dienophiles Reactions of o-QMs with different C=C dienophiles are listed in Table 3. Osyanin et al. reported the efficient reaction of quaternary ammonium salt

Photocatalytic formation of carbon–sulfur bonds

• Alexander Wimmer and
• Burkhard König

Beilstein J. Org. Chem. 2018, 14, 54–83, doi:10.3762/bjoc.14.4

• form an aryl radical. This reactive intermediate reacts with the anion of the respective thiol to form the corresponding diaryl sulfide adducts. The reaction conditions tolerate functional groups like alcohols, esters, halides, the trifluoromethyl group and heterocyclic substrates like thiazoles or

Preactivation-based chemoselective glycosylations: A powerful strategy for oligosaccharide assembly

• Weizhun Yang,
• Bo Yang,
• Sherif Ramadan and
• Xuefei Huang

Beilstein J. Org. Chem. 2017, 13, 2094–2114, doi:10.3762/bjoc.13.207

• . In comparison, the preactivation-based iterative glycosylation is unique, where a glycosyl donor is preactivated in the absence of an acceptor to produce a reactive intermediate (Scheme 1b) [18][19][20][21]. Upon complete donor activation, the acceptor is added to the reaction mixture, which

• drawbacks of the reactivity-based chemoselective glycosylation can be overcome through preactivation. Under the preactivation protocol, a thioglycosyl donor is activated in the absence of an acceptor to form a reactive intermediate (Scheme 13). Upon complete donor activation, a thioglycosyl acceptor is

Mechanochemical synthesis of small organic molecules

• Tapas Kumar Achar,
• Anima Bose and
• Prasenjit Mal

Beilstein J. Org. Chem. 2017, 13, 1907–1931, doi:10.3762/bjoc.13.186

• anilines proceed through the formation of unisolable reactive intermediate, aryl N-thiocarbamoylbenzotriazole, which rapidly decomposes to the corresponding isothiocyanate in organic solvent [189]. The Štrukil and Friščić group successfully demonstrated the formation of aryl-N-thiocarbamoylbenzotriazole

• under the LAG (liquid-assisted grinding) synthesis (Scheme 58) [190]. Initially, in situ monitoring of mechanochemical thiocarbamoylation suggests the formation of reactive intermediate which gradually disappears with the formation of thiocarbamoylated product. Furthermore isolation and spectroscopic